Adenylate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Adenylate Kinase
  Conformer 1
(PDB)
4ake (A)
  Conformer 2
(PDB)
3aky  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 115 1.8   3 - 28   76 - 76   78 - 117   160 - 212
2 23 1.43   29 - 35   61 - 75   77 - 77
3 42 0.83   118 - 159
4 25 0.8   36 - 60

Sequence


           ____________________________28_____35_______________________60_____________75___________________________________________ 
 4ake(A) : **MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQED-CRNGFLLDGFPRTIPQADAM----KEAGINVDYVLEFDVPD 
         :                                                                                                                          
 3aky    : ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDD 
           ____________________________32_____39_______________________64_____________79___________________________________________ 

           _117_____________________________________157___________________________________________________________                  
 4ake(A) : ELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG**                  
         :                                                                                                                          
 3aky    : ELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTG-----IWAGVDASQPPATVWADFLNKLGKN                  
           _126_____________________________________166___________________________________________________________                  

Morph

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Status: Initialising

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Domain Pairs

Fixed Domain Moving Domain Rotation Angle Translation   (A) Closure Bending Residues  
1 2 21.6 -0.9 87.7   28 - 29   75 - 78 Bending Region Analysis
1 3 46.7 -0.1 98.5   117 - 122   157 - 163 Bending Region Analysis
4 2 43.6 0.4 97.4   35 - 36   60 - 61 Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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