Adenylate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Adenylate Kinase
  Conformer 1
(PDB)
1zio  
  Conformer 2
(PDB)
1ake (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 179 2.64   3 - 124   150 - 211
2 25 0.78   125 - 149

Sequence


           ________________________________________________________________________________________________________________________ 
 1zio    : MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKDDCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVL 
         :                                                                                                                          
 1ake(A) : MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMK----EAGINVDYVLEFDVPDELI 
           ________________________________________________________________________________________________________________________ 

           _124_____________________148___________________________________________________________________________                  
 1zio    : MERLTGRRICRNCGATYHLIFHPPAKPGVCDKCGGELYQRADDNEATVANRLEVNMKQMK-PLVDFYEQKGYLRN-----INGEQDMEKVFADIRELLGGLAR                  
         :                                                                                                                          
 1ake(A) : VDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRL-VEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG****                  
           _120_____________________144___________________________________________________________________________                  

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
23.5
Translation
(A)
-0.3
Closure
(%)
99.5
Bending Residues
( green )
  124 - 125
  148 - 150
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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