Alanine Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Alanine Dehydrogenase
  Conformer 1
(PDB)
2vhx (A)
  Conformer 2
(PDB)
2vhx (F)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 189 0.3   3 - 130   309 - 369
2 175 0.41   131 - 308

Sequence


           ________________________________________________________________________________________________________________________ 
 2vhx(A) : MRVGIPTETKNNEFRVAITPAGVAELTRRGHEVLIQAGAGEGSAITDADFKAAGAQLVGTADQVWADADLLLKVKEPIAAEYGRLRHGQILFTFLHLAASRACTDALLDSGTTSIAYETV 
         :                                                                                                                          
 2vhx(F) : MRVGIPTETKNNEFRVAITPAGVAELTRRGHEVLIQAGAGEGSAITDADFKAAGAQLVGTADQVWADADLLLKVKEPIAAEYGRLRHGQILFTFLHLAASRACTDALLDSGTTSIAYETV 
           ________________________________________________________________________________________________________________________ 

           ___126__________________________________________________________________________________________________________________ 
 2vhx(A) : QTADGALPLLAPMSEVAGRLAAQVGAYHLMRTQGGRGVLMGGVPGVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVL 
         :                                                                                                                          
 2vhx(F) : QTADGALPLLAPMSEVAGRLAAQVGAYHLMRTQGGRGVLMGGVPGVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVL 
           ___126__________________________________________________________________________________________________________________ 

           _________________________________________________________________308____________________________________________________ 
 2vhx(A) : V---kAPKLVSNSLVAHMKPGAVLVDIAIDQGGCFEGSRPTTYDHPTFAVHDTLFYCVANMPASVPKTSTYALTNATMPYVLELADHGWRAACRSNPALAKGLSTHEGALLSERVATDLG 
         :                                                                                                                          
 2vhx(F) : VPGAKAPKLVSNSLVAHMKPGAVLVDIAIDQGGCFEGSRPTTYDHPTFAVHDTLFYCVANMPASVPKTSTYALTNATMPYVLELADHGWRAACRSNPALAKGLSTHEGALLSERVATDLG 
           _________________________________________________________________308____________________________________________________ 

           _____________                                                                                                            
 2vhx(A) : VPFTEPASVLA**                                                                                                            
         :                                                                                                                          
 2vhx(F) : VPFTEPASVLAHH                                                                                                            
           _____________                                                                                                            

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
15.0
Translation
(A)
-0.1
Closure
(%)
96.8
Bending Residues
( green )
  126 - 132
  308 - 320
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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