Alpha-Hemolysin Translocation Atp-Binding Protein Hlyb

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Alpha-Hemolysin Translocation Atp-Binding Protein Hlyb
  Conformer 1
(PDB)
2ffa (A)
  Conformer 2
(PDB)
2fgj (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 165 1.58   471 - 552   618 - 634   638 - 703
2 68 1.66   553 - 617   635 - 637

Sequence


           _____________________________________________________________________________________552________________________________ 
 2ffa(A) : HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 
         :                                                                                                                          
 2fgj(A) : **DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 
           _____________________________________________________________________________________552________________________________ 

           ______________________________617_____________633_______________________________________________________________________ 
 2ffa(A) : HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 
         :                                                                                                                          
 2fgj(A) : HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 
           ______________________________617_____________633_______________________________________________________________________ 

           ___                                                                                                                      
 2ffa(A) : QSD                                                                                                                      
         :                                                                                                                          
 2fgj(A) : QSD                                                                                                                      
           ___                                                                                                                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
18.9
Translation
(A)
0.2
Closure
(%)
22.2
Bending Residues
( green )
  552 - 553
  617 - 620
  633 - 649
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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