Amylomaltase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Amylomaltase
  Conformer 1
(PDB)
1esw (A)
  Conformer 2
(PDB)
2owx (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 414 0.64   3 - 215   218 - 225   247 - 247   276 - 296   299 - 300   316 - 322   327 - 328   330 - 331   336 - 355   359 - 498
2 80 0.68   216 - 217   226 - 246   248 - 275   297 - 298   301 - 315   323 - 326   329 - 329   332 - 335   356 - 358

Sequence


           ________________________________________________________________________________________________________________________ 
 1esw(A) : MELPRAFGLLLHPTSLPGPYGVGVLGREARDFLRFLKEAGGRYWQVLPLGPTGYGDSPYQSFSAFAGNPYLIDLRPLAERGYVRLEDPGFPQGRVDYGLLYAWKWPALKEAFRGFKEKAS 
         :                                                                                                                          
 2owx(A) : MELPRAFGLLLHPTSLPGPYGVGVLGQEARDFLRFLKEAGGRYWQVLPLGPTGYGDSPYQSFSAFAGNPYLIDLRPLAERGYVRLEDPGFPQGRVDYGLLYAWKWPALKEAFRGFKEKAS 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________________________________________213_________225_______________ 
 1esw(A) : PEEREAFAAFREREAWWLEDYALFMALKGAHGGLPWNRWPLPLRKREEKALREAKSALAEEVAFHAFTQWLFFRQWGALKAEAEALGIRIIGDMPIFVAEDSAEVWAHPEWFHLDEEGRP 
         :                                                                                                                          
 2owx(A) : PEEREAFAAFREREAWWLEDYALFMALKGAHGGLPWNRWPLPLRKREEKALREAKSALAEEVAFHAFTQWLFFRQWGALKAEAEALGIRIIGDMPIFVAEDSAEVWAHPEWFHLDEEGRP 
           __________________________________________________________________________________________213_________225_______________ 

           ___246_____________________270_______________________296________________315____322_326______335_________________355_____ 
 1esw(A) : TVVAGVPPDYFSETGQRWGNPLYRWDVLEREGFSFWIRRLEKALELFHLVRIDHFRGFEAYWEIPASCPTAVEGRWVKAPGEKLFQKIQEVFGEVPVLAEDLGVITPEVEALRDRFGLPG 
         :                                                                                                                          
 2owx(A) : TVVAGVPPDYFSETGQRWGNPLYRWDVLEREGFSFWIRRLEKALELFHLVRIDHFRGFEAYWEIPASCPTAVEGRWVKAPGEKLFQKIQEVFGEVPVLAEDLGVITPEVEALRDRFGLPG 
           ___246_____________________270_______________________296________________315____322_326______335_________________355_____ 

           ________________________________________________________________________________________________________________________ 
 1esw(A) : MKVLQFAFDDGMENPFLPHNYPAHGRVVVYTGTHDNDTTLGWYRTATPHEKAFMARYLADWGITFREEEEVPWALMHLGMKSVARLAVYPVQDVLALGSEARMNYPGRPSGNWAWRLLPG 
         :                                                                                                                          
 2owx(A) : MKVLQFAFD--mENPFLPHNYPAHGRVVVYTGTHDNDTTLGWYRTATPHEKAFMARYLADWGITFREEEEVPWALMHLGMKSVARLAVYPVQDVLALGSEARMNYPGRPSGNWAWRLLPG 
           ________________________________________________________________________________________________________________________ 

           ____________________                                                                                                     
 1esw(A) : ELSPEHGARLRAMAEATERL                                                                                                     
         :                                                                                                                          
 2owx(A) : ELSPEHGARLRAMAEATERL                                                                                                     
           ____________________                                                                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.5
Translation
(A)
0.2
Closure
(%)
98.2
Bending Residues
( green )
  213 - 218
  225 - 226
  246 - 253
  270 - 279
  296 - 301
  315 - 316
  322 - 323
  326 - 333
  335 - 337
  355 - 356
  358 - 359
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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