Aspartate Aminotransferase (E.C.2.6.1.1)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Aspartate Aminotransferase (E.C.2.6.1.1)
  Conformer 1
(PDB)
1ama  
  Conformer 2
(PDB)
9aat (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 286 0.4   40 - 328   358 - 360
2 99 0.77   17 - 39   329 - 357   361 - 408

Sequence


           ______________________________34________________________________________________________________________________________ 
 1ama    : SSWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFF 
         :                                                                                                                          
 9aat(A) : SSWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFF 
           ______________________________34________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1ama    : KFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGI 
         :                                                                                                                          
 9aat(A) : KFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGI 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________323_______________________________357___________ 
 1ama    : DVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPE 
         :                                                                                                                          
 9aat(A) : DVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPE 
           ________________________________________________________________________323_______________________________357___________ 

           _________________________________________                                                                                
 1ama    : QVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIHQVTK                                                                                
         :                                                                                                                          
 9aat(A) : QVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIHQVTK                                                                                
           _________________________________________                                                                                

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
14.9
Translation
(A)
-0.6
Closure
(%)
100.0
Bending Residues
( green )
  34 - 41
  323 - 329
  357 - 361
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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