Atp Synthase Alpha Chain, Mitochondrial

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Atp Synthase Alpha Chain, Mitochondrial
  Conformer 1
(PDB)
2hld (C)
  Conformer 2
(PDB)
1h8e (C)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 401 0.75   29 - 352   354 - 369   374 - 389   427 - 454   456 - 463   486 - 491   502 - 504
2 39 0.86   353 - 353   370 - 373   390 - 426   455 - 455
3 32 0.77   464 - 485   492 - 501

Sequence


           ________________________________________________________________________________________________________________________ 
 2hld(C) : *****NLNETGRVLAVGDGIARVFGLNNIQAEELVEFSSGVKGMALNLEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKAPGILP 
         :                                                                                                                          
 1h8e(C) : ADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIP 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2hld(C) : RRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEWFR 
         :                                                                                                                          
 1h8e(C) : RISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFR 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________________________352______________369_373_______ 
 2hld(C) : DNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSRVGSAA 
         :                                                                                                                          
 1h8e(C) : DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 
           _________________________________________________________________________________________350______________367_371_______ 

           __385______________________________________426_____________________450___456__________________________485_____________50 
 2hld(C) : QVKALKQVAGSLKLFLAQYREVAAFAQFGSDLDASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSNHNELLTEIREKGELSKELLASLK 
         :                                                                                                                          
 1h8e(C) : QTRAMKQVAGTMKLELAQYREVAAFA----dLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTDGKISEESDAKLK 
           __383______________________________________424_____________________448___454__________________________483_____________49 

           1___________                                                                                                             
 2hld(C) : SATESFVAT***                                                                                                             
         :                                                                                                                          
 1h8e(C) : EIVTNFLAGFEA                                                                                                             
           9___________                                                                                                             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.8
Translation
(A)
-0.1
Closure
(%)
80.6
Bending Residues
( green )
  352 - 354
  369 - 370
  373 - 374
  385 - 390
  426 - 427
  450 - 463
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
10.0
Translation
(A)
0.4
Closure
(%)
100.0
Bending Residues
( green )
  456 - 465
  485 - 492
  501 - 502
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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