Bactericidal/permeability-Increasing Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Bactericidal/permeability-Increasing Protein
  Conformer 1
(PDB)
1bp1 (A)
  Conformer 2
(PDB)
2ewf (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 45 11.32   13 - 21   23 - 23   40 - 74
2 32 7.22   22 - 22   24 - 39   75 - 89

Sequence


           ________________________________________________________________________________________________________________________ 
 1bp1(A) : ************************************************************************************************************************ 
         :                                                                                                                          
 2ewf(A) : MAKKVNWYVSCSPRSPEKIQPELKVLANFEGSYWKGVKGYKAQEAFAKELAALPQFLGaFSTRDRVAPMKTYGFVFVDEEGYLRITEAGKMLANNRRPKDVFLKQLVKWQYPSFQHKGKE 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1bp1(A) : ************************************************************************************************************************ 
         :                                                                                                                          
 2ewf(A) : YPEEEWSINPLVFVLSLLKKVGGLSKLDIAMFCLTATNNNQVDEIAEEIMQFRNEREKIKGQNKKLEFTENYFFKRFEKIYGNVsHKSKIETKMRNARDVADATTRYFRYTGLFVARGNQ 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________21________________39_________________________________74__________ 
 1bp1(A) : ************************************VNPGVVVRISQKGLDYASQQGTAALQKELKRIKIPDYSDSFKIKHLGKGHYSFYSMDIREFQLPSSQISMVPNVGLKFSISNAN 
         :                                                                                                                          
 2ewf(A) : LVLNPEKSDLIDEIISSSKVVKNYTRVEEFHEYYGNPSLPQFSFETKEQLLDLAHRIRDENTRLAEQLVEHFPNVKVEIQVLEDIYNSLNKKVDVETLKDVIYHAKELQLELKKKKLQAD 
           ______________________________________________________314_______________332________________________________367__________ 

           ________________________________________________________________________________________________________________________ 
 1bp1(A) : IKISGKWKAQKRFLKMSGNFDLSIEGMSISADLKLGSNPTSGKPTITCSSCSSHINSVHVHISKSKVGWLIQLFHKKIESALRNKMNSQVCEKVTNSVSSKLQPYFQTLPVMTKIDSVAG 
         :                                                                                                                          
 2ewf(A) : FNDPRQLEEVIDLLEVYHEKKNVIEEKIKARFIANKNTVFEWLTWNGFIILGNALEYKNNFVIDEELQPVTHAAGNQPDMEIIYEDFIVLGEVTTSKGATQFKMESEPVTRHYLNKKKEL 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1bp1(A) : INYGLVAPPATTAETLDVQMKGEFYSENHHNPPPFAPPVMEFPAAHDRMVYLGLSDYFFNTAGLVYQEAGVLKMTLRDDMIPKESKFRLTTKFFGTFLPEVAKKFPNMKIQIHVSASTPP 
         :                                                                                                                          
 2ewf(A) : EKQGVEKELYCLFIAPEINKNTFEEFMKYNIVQNTRIIPLSLKQFNMLLMVQKKLIEKGRRLSSYDIKNLMVSLYRTTIECERKYTQIKAGLEETLNNWVVDKEVRF************* 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1bp1(A) : HLSVQPTGLTFYPAVDVQAFAVLPNSALASLFLIGMHTTGSMEVSAESNRLVGELKLDRLLLELKHSNIGPFPVELLQDIMNYIVPILVLPRVNEKLQKGFPLPTPARVQLYNVVLQPHQ 
         :                                                                                                                          
 2ewf(A) : ************************************************************************************************************************ 
           ________________________________________________________________________________________________________________________ 

           ____________                                                                                                             
 1bp1(A) : NFLLFGADVVYK                                                                                                             
         :                                                                                                                          
 2ewf(A) : ************                                                                                                             
           ____________                                                                                                             

Morph

Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
161.1
Translation
(A)
-3.9
Closure
(%)
93.2
Bending Residues
( green )
  21 - 24
  39 - 40
  74 - 76
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download