Beta-Amylase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Beta-Amylase
  Conformer 1
(PDB)
1veo (A)
  Conformer 2
(PDB)
1j18 (A)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 311 0.24   21 - 33   47 - 79   84 - 158   161 - 324   332 - 355   393 - 394
2 194 0.28   6 - 20   34 - 46   80 - 83   159 - 160   325 - 331   356 - 392   395 - 510

Sequence


           ________________18_____________33___________46_______________________________79__83_____________________________________ 
 1veo(A) : AVNGKGMNPDYKAYLMAPLKKIPEVTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDFSYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWNQKSDDSLYFKS 
         :                                                                                                                          
 1j18(A) : AVNGKGMNPDYKAYLMAPLKKIPEVTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDFSYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWNQKSDDSLYFKS 
           ________________18_____________33___________46_______________________________79__83_____________________________________ 

           ___________________________________158__________________________________________________________________________________ 
 1veo(A) : ETGTVNKETLNPLASDVIRKEYGELYTAFAAAMKPYKDVIAKIFLSGGPAGELRYPSYTTSDGTGYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAILPPSDGEQF 
         :                                                                                                                          
 1j18(A) : ETGTVNKETLNPLASDVIRKEYGELYTAFAAAMKPYKDVIAKIYLSGGPAGELRYPSYTTSDGTGYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAILPPSDGEQF 
           ___________________________________158__________________________________________________________________________________ 

           _________________________________________________________________________________324____331_____________________355_____ 
 1veo(A) : LMNGYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQYNNPTIPHGAEKPAGYNDYSHLLDAFKSAKLDVTFTCLEMTDKGSYPEYSMPKTLVQNIATLANEK 
         :                                                                                                                          
 1j18(A) : LMNGYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQYNNPTIPHGAEKPAGYNDYSHLLDAFKSAKLDVTFTCLEMTDKGSYPEYSMPKTLVQNIATLANEK 
           _________________________________________________________________________________324____331_____________________355_____ 

           _____________________________392________________________________________________________________________________________ 
 1veo(A) : GIVLNGENALSIGNEEEYKRVAEMAFNYNFAGFTLLRYQDVMYNNSLMGKFKDLLGVTPVMQTIVVKNVPTTIGDTVYITGNRAELGSWDTKQYPIQLYYDSHSNDWRGNVVLPAERNIE 
         :                                                                                                                          
 1j18(A) : GIVLNGENALSIGNEEEYKRVAEMAFNYNFAGFTLLRYQDVMYNNSLMGKFKDLLGVTPVMQTIVVKNVPTTIGDTVYITGNRAELGSWDTKQYPIQLYYDSHSNDWRGNVVLPAERNIE 
           _____________________________392________________________________________________________________________________________ 

           ____________________________________                                                                                     
 1veo(A) : FKAFIKSKDGTVKSWQTIQQSWNPVPLKTTSHTSSW                                                                                     
         :                                                                                                                          
 1j18(A) : FKAFIKSKDGTVKSWQTIQQSWNPVPLKTTSHTSSW                                                                                     
           ____________________________________                                                                                     

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
1.6
Translation
(A)
0.1
Closure
(%)
82.9
Bending Residues
( green )
  18 - 31
  33 - 34
  46 - 47
  79 - 80
  83 - 84
  158 - 161
  324 - 329
  331 - 336
  355 - 356
  392 - 395
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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