Cadherin-23

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cadherin-23
  Conformer 1
(PDB)
4apx (A)
  Conformer 2
(PDB)
2whv (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 116 0.45   3 - 108   136 - 141   191 - 194
2 88 0.56   109 - 135   142 - 190   195 - 206

Sequence


           _________________________________________________________________________________________________________108____________ 
 4apx(A) : MQVNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIP 
         :                                                                                                                          
 2whv(A) : MQVNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIP 
           _________________________________________________________________________________________________________108____________ 

           __________133_____141______________________________________________190_194______________                                 
 4apx(A) : ENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDLE                                 
         :                                                                                                                          
 2whv(A) : ENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDLE                                 
           __________133_____141______________________________________________190_194______________                                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.0
Translation
(A)
0.4
Closure
(%)
97.0
Bending Residues
( green )
  108 - 116
  133 - 136
  141 - 142
  190 - 191
  194 - 195
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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