Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB)
1mxe (A)
  Conformer 2
(PDB)
1ooj (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 73 0.87   7 - 79
2 64 0.9   80 - 143

Sequence


           ________________________________________________________________________77______________________________________________ 
 1mxe(A) : LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDE 
         :                                                                                                                          
 1ooj(A) : *TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDE 
           ________________________________________________________________________78______________________________________________ 

           ________________________                                                                                                 
 1mxe(A) : MIREADIDGDGQVNYEEFVTMMTS                                                                                                 
         :                                                                                                                          
 1ooj(A) : MIREADIDGDGQVNYEEFVTMM**                                                                                                 
           ________________________                                                                                                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
160.8
Translation
(A)
-7.3
Closure
(%)
44.7
Bending Residues
( green )
  77 - 81
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download