Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB)
1cll (A)
  Conformer 2
(PDB)
1qtx (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 73 1.52   6 - 78
2 67 1.2   79 - 145

Sequence


           ____________________________________________________________________________78__________________________________________ 
 1cll(A) : ***LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEE 
         :                                                                                                                          
 1qtx(A) : ADQLTDEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEE 
           ____________________________________________________________________________78__________________________________________ 

           ____________________________                                                                                             
 1cll(A) : VDEMIREADIDGDGQVNYEEFVQMMTA*                                                                                             
         :                                                                                                                          
 1qtx(A) : VDEMIREADVDGDGQVNYEEFVQVMMAK                                                                                             
           ____________________________                                                                                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
162.7
Translation
(A)
-2.0
Closure
(%)
87.7
Bending Residues
( green )
  78 - 82
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download