Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB)
1cll (A)
  Conformer 2
(PDB)
1qiv (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 71 1.13   6 - 75   77 - 77
2 68 2.23   76 - 76   78 - 144

Sequence


           _____________________________________________________________________73_________________________________________________ 
 1cll(A) : *LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD 
         :                                                                                                                          
 1qiv(A) : QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD 
           _____________________________________________________________________73_________________________________________________ 

           _________________________                                                                                                
 1cll(A) : EMIREADIDGDGQVNYEEFVQMMTA                                                                                                
         :                                                                                                                          
 1qiv(A) : EMIREADIDGDGQVNYEEFVQMMT*                                                                                                
           _________________________                                                                                                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
142.1
Translation
(A)
-2.6
Closure
(%)
89.8
Bending Residues
( green )
  73 - 80
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download