Cd2 (Human)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cd2 (Human)
  Conformer 1
(PDB)
1hnf  
  Conformer 2
(PDB)
1hng (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 108 1.44   7 - 107   125 - 126   164 - 170
2 58 1.84   108 - 124   127 - 163   171 - 175

Sequence


           _____________________________________________________________________________________________________107______________12 
 1hnf    : TNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCE 
         :                                                                                                                          
 1hng(A) : *DSGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTL--VAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCE 
           _____________________________________________________________________________________________________102______________11 

           4_____________________________________163____170____________                                                             
 1hnf    : VMNGTDPELNLYQDGKHLK-LSQRVITHKWTTSLSAKFKCTAGNKVSKESSVEPVSCPEK                                                             
         :                                                                                                                          
 1hng(A) : VLEGTDVELKLYQGKEHLRSLRQKTMSYQWT-NLRAPFKCKAVNRVSQESEMEVVNCPE*                                                             
           9_____________________________________158____165____________                                                             

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
19.6
Translation
(A)
0.5
Closure
(%)
99.7
Bending Residues
( green )
  107 - 108
  124 - 127
  163 - 164
  170 - 171
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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