Cgmp-Dependent Protein Kinase 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cgmp-Dependent Protein Kinase 1
  Conformer 1
(PDB)
4ku7 (A)
  Conformer 2
(PDB)
4ku8 (A)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 72 1.2   254 - 330
2 25 0.89   229 - 253

Sequence


           __________________________________253___________________________________________________________________________________ 
 4ku7(A) : ******KHTEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGTVNVTREd-----PVFLRTLGKGDWFGEKALQGEDVRTANVIAAEAVTCLVIDRDSF 
         :                                                                                                                          
 4ku8(A) : GSTGLIKHTEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGTVNVTREDSPSEDPVFLRTLGKGDWFGEKALQGEDVRTANVIAAEAVTCLVIDRDSF 
           __________________________________253___________________________________________________________________________________ 

           ______________________________                                                                                           
 4ku7(A) : KHLIGGLDDVSNKAY***************                                                                                           
         :                                                                                                                          
 4ku8(A) : KHLIGGLDDVSNKAYEDAEAKAKYEAEAAF                                                                                           
           ______________________________                                                                                           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
21.4
Translation
(A)
1.0
Closure
(%)
17.4
Bending Residues
( green )
  253 - 254
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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