3C-Like Protease

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 3C-Like Protease
  Conformer 1
(PDB)
4in1 (A)
  Conformer 2
(PDB)
4inh (H)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 128 0.5   6 - 99   134 - 167
2 26 1.32   100 - 133

Sequence


           ___________________________________________________________________________________________________99___________________ 
 4in1(A) : *SAPPTLWSRVTKFGSGWGFWVSPTVFITTTHVVPTGVKEFFGEPLSSIAIHQAGEFTQFRFSKKMRPDLTGMVLEEGCPEGTVCSVLIKRDSGELLPLAVRMGAIASMRIQGRLVHGQS 
         :                                                                                                                          
 4inh(H) : DKAPPTLWSRVTKFGSGWGFWVSPTVFITTTHVVPTGVKEFFGEPLSSIAIHQAGEFTQFRFSKKMRPDLTGMVLEEGCPEGTVCSVLIKRDSGELLPLAVRMGAIASMRIQGRLVHGQS 
           ___________________________________________________________________________________________________99___________________ 

           _____133________________________________________________                                                                 
 4in1(A) : GMLLT-lGTIPGDCGAPYVHKRGNDWVVCGVHAAATKSGNTVVCAVQAGEGEINFE                                                                 
         :                                                                                                                          
 4inh(H) : GMLLmDLGTIPGDCGAPYVHKRGNDWVVCGVHAAATKSGNTVVCAVQA********                                                                 
           _____133________________________________________________                                                                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.7
Translation
(A)
0.0
Closure
(%)
76.9
Bending Residues
( green )
  99 - 100
  133 - 137
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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