Complement Decay-Accelerating Factor

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Complement Decay-Accelerating Factor
  Conformer 1
(PDB)
1h03 (P)
  Conformer 2
(PDB)
1ok3 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 68 0.4   35 - 39   64 - 127
2 52 0.74   7 - 34   40 - 63

Sequence


           ________________________________________________________________________________________________________________________ 
 1h03(P) : ************************************************************************************************************************ 
         :                                                                                                                          
 1ok3(A) : QDCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFCNRSCEVPTRLNSASLKQPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWST 
           ________________________________________________________________________________________________________________________ 

           ___________________________________34__38_______________________63______________________________________________________ 
 1h03(P) : *******KSCPNPGEIRNGQIDVPGGILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDE 
         :                                                                                                                          
 1ok3(A) : AVEFCKKKSCPNPGEIRNGQIDVPGGILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFT-iGEHSIYCTVNNDE 
           __________________________________158_162______________________187______________________________________________________ 

           _____________                                                                                                            
 1h03(P) : GEWSGPPPECRG*                                                                                                            
         :                                                                                                                          
 1ok3(A) : GEWSGPPPECRGC                                                                                                            
           _____________                                                                                                            

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
12.6
Translation
(A)
0.3
Closure
(%)
94.7
Bending Residues
( green )
  34 - 35
  38 - 40
  63 - 64
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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