3-Deoxy-Manno-Octulosonate Cytidylyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 3-Deoxy-Manno-Octulosonate Cytidylyltransferase
  Conformer 1
(PDB)
1vh3 (C)
  Conformer 2
(PDB)
1vh3 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 117 1.31   4 - 73   77 - 108   191 - 193   232 - 247
2 112 0.74   74 - 76   109 - 190   194 - 231

Sequence


           ____________________________________________________________________73________________________________108_______________ 
 1vh3(C) : SFTVIIPARFASSRLPGKPLADIKGKPiQHVFEKALQSGASRVIIATDNENVADVAKSFGAEVCtSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNa 
         :                                                                                                                          
 1vh3(B) : SFTVIIPARFA--rLPGKPLADIKGKPiQHVFEKALQSGASRVIIATDNENVADVAKSFGAEVCtSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNa 
           ____________________________________________________________________73________________________________108_______________ 

           ______________________________________________________________190______________________________________231______________ 
 1vh3(C) : SLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQF---------lSDAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDLE 
         :                                                                                                                          
 1vh3(B) : SLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFnLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDLE 
           ______________________________________________________________190______________________________________231______________ 

           ____                                                                                                                     
 1vh3(C) : KVRA                                                                                                                     
         :                                                                                                                          
 1vh3(B) : KVRA                                                                                                                     
           ____                                                                                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
18.1
Translation
(A)
-0.7
Closure
(%)
92.2
Bending Residues
( green )
  73 - 77
  108 - 109
  190 - 191
  193 - 194
  231 - 232
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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