Dihydrodipicolinate Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Dihydrodipicolinate Synthase
  Conformer 1
(PDB)
3m5v (A)
  Conformer 2
(PDB)
3ler (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 245 0.2   6 - 13   26 - 28   31 - 42   48 - 50   67 - 266   271 - 296
2 39 0.17   14 - 25   29 - 30   43 - 47   51 - 66   267 - 270

Sequence


           _________13_________24__28____________42___47_50______________66________________________________________________________ 
 3m5v(A) : DKNIIIGAtALITPFKNGKVDEQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQGLYEH 
         :                                                                                                                          
 3ler(B) : DKNIIIGAtALITPFKNGKVDEQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQGLYEH 
           _________13_________24__28____________42___47_50______________66________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3m5v(A) : YKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCENIYGVKEASGNIDKCVDLLAHEPRlISGEDAINYPILSNGGKGVISVTSNLLPDiSALTHFALDENYKEAKKINDELYNINK 
         :                                                                                                                          
 3ler(B) : YKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCENIYGV-eASGNIDKCVDLLAHEPRlISGEDAINYPILSNGGKGVISVTSNLLPDiSALTHFALDENYKEAKKINDELYNINK 
           ________________________________________________________________________________________________________________________ 

           _________________266_______________________________                                                                      
 3m5v(A) : ILFCESNPIPIKTAyLAGLIESLEFRLPLCSPSKENFAKIEEVkKYKIKGF                                                                      
         :                                                                                                                          
 3ler(B) : ILFCESNPIPIKTAyLAGLIESLEFRLPLCSPSKENFAKIEEVkKYKIKGF                                                                      
           _________________266_______________________________                                                                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
1.8
Translation
(A)
-0.1
Closure
(%)
98.1
Bending Residues
( green )
  13 - 14
  24 - 26
  28 - 31
  42 - 43
  47 - 48
  50 - 51
  66 - 67
  266 - 271
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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