Diphtheria Toxin ()

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Diphtheria Toxin ()
  Conformer 1
(PDB)
1tox (A)
  Conformer 2
(PDB)
4ow6 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 319 2.36   3 - 387
2 146 0.87   388 - 533

Sequence


           ________________________________________________________________________________________________________________________ 
 1tox(A) : GADDVVDSSKSFVMENFSSYHGTKPGYVDSIQKGIQKP--------dDDWKGFYSTDNKYDAAGYSVDNENPLSGKAGGVVKVTYPGLTKVLALKVDNAETIKKELGLSLTEPLMEQVGT 
         :                                                                                                                          
 4ow6(A) : GADDVVDSSKSFVMENFSSYHGTKPGYVDSIQKGIQKPKSGTQGNYDDDWKGFYSTDNKYDAAGYSVDNENPLSGKAGGVVKVTYPGLTKVLALKVDNAETIKKELGLSLTEPLMEQVGT 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1tox(A) : EEFIKRFGDGASRVVLSLPFAEGSSSVEYINNWEQAKALSVELEINFETRGKRGQDAMYEYMAQACAsCINLDWDVIRDKTKTKIESLKEHGPIKNKMSESPNKTVSEEKAKQYLEEFHQ 
         :                                                                                                                          
 4ow6(A) : EEFIKRFGDGASRVVLSLPFAEGSSSVEYINNWEQAKALSVELEINFETRGKRGQDAMYEYMAQACAsCINLDWDVIRDKTKTKIESL-------------------------------- 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1tox(A) : TALEHPELSELKTVTGTNPVFAGANYAAWAVNVAQVIDSETADNLEKTTAALSILPGIGSVMGIADGAVHHNTEEIVAQSIALSSLMVAQAIPLVGELVDIGFAAYNFVESIINLFQVVH 
         :                                                                                                                          
 4ow6(A) : --------------tGTNPVFAGANYAAWAVNVAQVIDSETADNLEKTTAALSILPGIGSVMGIADGAVHHNTEEIVAQSIALSSLMVAQAIPLVGELVDIGFAAYNFVESIINLFQVVH 
           ________________________________________________________________________________________________________________________ 

           ___378__________________________________________________________________________________________________________________ 
 1tox(A) : NSYNRPAYSPGHKTQPFLHDGYAVSWNTVEDSIIRTGFQGESGHDIKITAENTPLPIAGVLLPTIPGKLDVNKSKTHISVNGRKIRMRCRAIDGDVTFCRPKSPVYVGNGVHANLHVAFH 
         :                                                                                                                          
 4ow6(A) : NSYNRPAYSPGHKTQPFLHDGYAVSWNTVEDSIIRTGFQGESGHDIKITAENTPLPIAGVLLPTIPGKLDVNKSKTHISVNGRKIRMRCRAIDGDVTFCRPKSPVYVGNGVHANLHVAFH 
           ___378__________________________________________________________________________________________________________________ 

           ___________________________________________                                                                              
 1tox(A) : RSSSEKIHSNEISSDSIGVLGYQKTVDHTKVNSKLSLFFEIKS                                                                              
         :                                                                                                                          
 4ow6(A) : RSSSEKIHSNEISSDSIGVLGYQKTVDHTKVNSKLSLFFEIKS                                                                              
           ___________________________________________                                                                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
179.1
Translation
(A)
-0.2
Closure
(%)
100.0
Bending Residues
( green )
  378 - 388
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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