DNA Mismatch Repair Protein Muts

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name DNA Mismatch Repair Protein Muts
  Conformer 1
(PDB)
1fw6 (A)
  Conformer 2
(PDB)
1nne (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 557 1.13   91 - 91   119 - 226   229 - 405   409 - 410   418 - 420   484 - 763
2 107 0.71   5 - 90   92 - 118   227 - 228
3 72 0.93   406 - 408   411 - 417   421 - 483

Sequence


           ________________________________________________________________________________________90_________________________118__ 
 1fw6(A) : *EG-lKGEGPGPLPPLLQQYVELRDQYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTSKDFTTP-aGIPLRAFEAYAERLLK-gFRLAVADQVEPAEEAEGLVRREVTQLLTPGT 
         :                                                                                                                          
 1nne(B) : MEGMLKGEGPGPLPPLLQQYVELRDQYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTSKDFTTPMAGIPLRAFEAYAERLLKMGFRLAVADQVEP------lVRREVTQLLTPGT 
           ______________________________________________________________________________________1090________________________1118__ 

           _______________________________________________________________________________________________________226______________ 
 1fw6(A) : LLQESLLPREANYLAAIATGDGWGLAFLDVSTGEFKGTVLKSKSALYDELFRHRPAEVLLAPELLENGAFLDEFRKRFPV-lSEAPFEPEGEGPLALRRARGALLAYAQRTQGGALSLQP 
         :                                                                                                                          
 1nne(B) : LLQESLLPREANYLAAIATGDGWGLAFLDVSTGEFKGTVLKSKSALYDELFRHRPAEVLLAPELLENGAFLDEFRKRFPVMLSEAPFEPEGEGPLALRRARGALLAYAQRTQGGALSLQP 
           ______________________________________________________________________________________________________1226______________ 

           ________________________________________________________________________________________________________________________ 
 1fw6(A) : FRFYDPGAF-rLPEATLRALEVFEPLRGQDTLFSVLDETRTAPGRRLLQSWLRHPLLDRGPLEARLDRVEGFVREGALREGVRRLLYRLADLERLATRLELGRASPKDLGALRRSLQILP 
         :                                                                                                                          
 1nne(B) : FRFYDPGAFMRLPEATLRALEVFEPLRGQDTLFSVLDETRTAPGRRLLQSWLRHPLLDRGPLEARLDRVEGFVREGALREGVRRLLYRLADLERLATRLELGRASPKDLGALRRSLQILP 
           ________________________________________________________________________________________________________________________ 

           __________________________________________405_________417_______________________________________________________________ 
 1fw6(A) : ELRALLGEEVGLPDLSPLKEELEAALVEDPPLKVSEGGLIREGYDPDLDALRAAHREGVAYFLELEERERERTGIPTLKVGYNAVFGYYLEVTRPYYERVPKEYRPVQTLKDRQRYTLPE 
         :                                                                                                                          
 1nne(B) : ELRALLGEEVGLPDLSPLKEELEAALVEDPPLKVSEGGLIREGYDPDLDALRAAHREGVAYFLELEERERERTGIPTLKVGYNAVFGYYLEVTRPYYERVPKEYRPVQTLKDRQRYTLPE 
           _________________________________________1405________1417______________________________________________________________1 

           483_____________________________________________________________________________________________________________________ 
 1fw6(A) : -kEKEREVYRLEALIRRREEEVFLEVRERAKRQAEALREAARILAELDVYAALAEVAVRYGYVRPRFGDRLQIRAGRHPVVERRTEFVPNDLE-aHELVLITGPN-aGKSTFLRQTALIA 
         :                                                                                                                          
 1nne(B) : MKEKEREVYRLEALIRRREEEVFLEVRERAKRQAEALREAARILAELDVYAALAEVAVRYGYVRPRFGDRLQIRAGRHPVVERRTEFVPNDLEMAHELVLITGPNMAGKSTFLRQTALIA 
           483_____________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1fw6(A) : LLAQVGSFVPAEEAHLPLFDGIYTRIGA------gKSTF-vE-eEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTALGLPRLKNLHVAAREEAG 
         :                                                                                                                          
 1nne(B) : LLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTALGLPRLKNLHVAAREEAG 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________                                                                            
 1fw6(A) : GLVFYHQVLPGPASKSYGVEVAA-aGLPKEVVARARALLQA-aAR                                                                            
         :                                                                                                                          
 1nne(B) : GLVFYHQVLPGPASKSYGVEVAAMAGLPKEVVARARALLQAMAAR                                                                            
           _____________________________________________                                                                            

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.7
Translation
(A)
0.7
Closure
(%)
6.6
Bending Residues
( green )
  90 - 92
  118 - 119
  226 - 229
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
10.0
Translation
(A)
-1.3
Closure
(%)
54.5
Bending Residues
( green )
  405 - 406
  408 - 411
  417 - 418
  420 - 421
  483 - 484
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Shear

PyMOL Script

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