Elongation Factor Tu

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Elongation Factor Tu
  Conformer 1
(PDB)
1exm (A)
  Conformer 2
(PDB)
1ob2 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 283 1.49   5 - 223   226 - 254   265 - 310
2 104 0.86   224 - 225   255 - 264   311 - 403

Sequence


           ________________________________________________________________________________________________________________________ 
 1exm(A) : **GEFIRTKPHVNVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 
         :                                                                                                                          
 1ob2(A) : AKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGA-ARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________________________________________________223_________________ 
 1exm(A) : LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 
         :                                                                                                                          
 1ob2(A) : LLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALE----------GDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTG 
           ____________________________________________________________________________________________________212_________________ 

           ___________254_______264___________________________________________310__________________________________________________ 
 1exm(A) : RIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVE 
         :                                                                                                                          
 1ob2(A) : RVERGIIKVGEEVEIVGIK-ETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVE 
           ___________243_______252___________________________________________298__________________________________________________ 

           _____________________________________________                                                                            
 1exm(A) : MVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE                                                                            
         :                                                                                                                          
 1ob2(A) : MVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLS                                                                            
           _____________________________________________                                                                            

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
14.1
Translation
(A)
0.2
Closure
(%)
31.9
Bending Residues
( green )
  223 - 226
  254 - 255
  264 - 265
  310 - 312
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download