Ephrin Type-A Receptor 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ephrin Type-A Receptor 2
  Conformer 1
(PDB)
2x10 (A)
  Conformer 2
(PDB)
2x11 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 211 1.32   201 - 213   218 - 222   227 - 432
2 163 1.04   29 - 200   214 - 217   223 - 226
3 83 0.75   438 - 526

Sequence


           ________________________________________________________________________________________________________________________ 
 2x10(A) : AKEVVLLDFAAA---lGWLTHPYGKGWDL-qNI-nD-pIY-ySVCNV-sGDQDNWLRTNWVYRGEAERIFIELKFTVRDCNSFPGGASSCKETFNLYYAESDLDYGTNFQKRLFTKIDTI 
         :                                                                                                                          
 2x11(A) : *KEVVLLDFAAAGGELGWLTHPYGKGWDLMQNIMNDMPIYMYSVCNVMSGDQDNWLRTNWVYRGEAERIFIELKFTVRDCNSFPGGASSCKETFNLYYAESDLDYGTNFQKRLFTKIDTI 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________200__________213_217______226_______________________________________ 
 2x10(A) : APDEITVS---------lNVEERSVGPLTRKGFYLAFQDIGACVALLSVRVYYKKCPELLQGLAHFPETIAGSDAPSLATVAGTCVDHAVVPPGGEEPR-hCAVDGEWLVPIGQCLCQAG 
         :                                                                                                                          
 2x11(A) : APDEITVSSDFEARHVKLNVEERSVGPLTRKGFYLAFQDIGACVALLSVRVYYKKCPELLQGLAHFPETIAGSDAPSLATVAGTCVDHAVVPP--eEPRMHCAVDGEWLVPIGQCLCQAG 
           ____________________________________________________200__________213_217______226_______________________________________ 

           ________________________________________________________________________________________________________________________ 
 2x10(A) : YEKVEDACQACSPGFFKFEASESPCLECPEHTLPSPEGATSCECEEGFFRAPQDPAS-pCTRPPSAPHYLTAVG-gAKVELRWTPPQDSGGREDIVYSVTCEQc------GPCEASVRYS 
         :                                                                                                                          
 2x11(A) : YEKVEDACQACSPGFFKFEASESPCLECPEHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLTAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPsGECGPCEASVRYS 
           ________________________________________________________________________________________________________________________ 

           __________________________________________431___________________________________________________________________________ 
 2x10(A) : EPPHGLTRTSVTVSDLEPH-nYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQSRVWKYEVTYRKKGDSNSYNVRRTEGFSVTLDDLAPDTTYLVQ 
         :                                                                                                                          
 2x11(A) : EPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASV-----ePPKVRLEGRST-sLSVSWSIPPPQQSRVWKYEVTYRKK--sNSYNVRRTEGFSVTLDDLAPDTTYLVQ 
           __________________________________________431___________________________________________________________________________ 

           _______________________                                                                                                  
 2x10(A) : VQALTQEGQGAGSKVHEFQTLSP                                                                                                  
         :                                                                                                                          
 2x11(A) : VQALTQ---gAGSKVHEFQTLS*                                                                                                  
           _______________________                                                                                                  

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
21.1
Translation
(A)
-0.3
Closure
(%)
94.8
Bending Residues
( green )
  200 - 201
  213 - 214
  217 - 224
  226 - 227
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
67.8
Translation
(A)
-8.9
Closure
(%)
70.8
Bending Residues
( green )
  431 - 440
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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