Fab Fragment Of Murine Monoclonal Antibody An02 Complex 3 With Its Hapten (2,2,6,6-Tetramethyl-1-Piperidinyloxy- 4 Dinitrophenyl)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Fab Fragment Of Murine Monoclonal Antibody An02 Complex 3 With Its Hapten (2,2,6,6-Tetramethyl-1-Piperidinyloxy- 4 Dinitrophenyl)
  Conformer 1
(PDB)
1baf (L)
  Conformer 2
(PDB)
1ad9 (L)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 107 0.82   106 - 212
2 102 1.02   3 - 105

Sequence


           ____________________________________________________________________________________________________________105_________ 
 1baf(L) : QIVLTQSPAIMSASPGEKVTMTCSASSSVY------YMYWYQQKPGSSPRLLIYDTSNLASGVPVRFSGSGSGTSYSLTISRMEAEDAATYYCQQWSSYPPITFGVGTKLELKRADAAPT 
         :                                                                                                                          
 1ad9(L) : DIQMTQSPSTLSASVGDRVTITCRSSKSLLHSNGDTFLYWFQQKPGKAPKLLMYRMSNLASGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCMQHLEYP-FTFGQGTKVEVKRTVAAPS 
           ____________________________________________________________________________________________________________105_________ 

           ____________________________________________________________________________________________________                     
 1baf(L) : VSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC                     
         :                                                                                                                          
 1ad9(L) : VFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC                     
           ____________________________________________________________________________________________________                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
25.8
Translation
(A)
0.3
Closure
(%)
78.3
Bending Residues
( green )
  105 - 106
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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