F1-Atpase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name F1-Atpase
  Conformer 1
(PDB)
1sky (E)
  Conformer 2
(PDB)
1bmf (F)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 274 1.62   4 - 133   174 - 326
2 182 1.12   134 - 173   327 - 468

Sequence


           ________________________________________________________________________________________________________________________ 
 1sky(E) : MTRGRVIQVMGPVVDVKFENGHLPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVRTIAMASTDGLIRGMEVIDTGAPISVPVGQVTLGRVFNVLGEPIDLEGDIPADARRDPIHR 
         :                                                                                                                          
 1bmf(F) : *TTGRIVAVIGAVVDVQFDEG-LPPILNALEVQGR-------ETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTK-QFAAIHA 
           ________________________________________________________________________________________________________________________ 

           _________132______________________________________173___________________________________________________________________ 
 1sky(E) : PAPKFEELATEVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEMKDSGVI------SKTAMVFGQMNEPPGARMRVALTGLT 
         :                                                                                                                          
 1bmf(F) : EAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLT 
           _________130______________________________________171___________________________________________________________________ 

           _________________________________________________________________________________________326____________________________ 
 1sky(E) : MAEYFRDEQGQDGLLFIDNIFRFTQAGSEVSALLGRMPSAIGYQPTLATEMGQLQERITSTAKGSITSIQAIYVPADDYTDPAPATTFSHLDATTNLERKLAEMGIYPAVDPLVSTSRAL 
         :                                                                                                                          
 1bmf(F) : VAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIM 
           _________________________________________________________________________________________330____________________________ 

           ____________________________________________________________________________________________________________________     
 1sky(E) : APEIVGEEHYQVARKVQQTLERYKELQDIIAILGMDELSDEDKLVVHRARRIQFFLSQNFHVAEQFTGQPGSYVPVKETVRGFKEILEGKYDHLPEDRFRLVGRIEEVVEKAKAMG     
         :                                                                                                                          
 1bmf(F) : DPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA     
           ____________________________________________________________________________________________________________________     

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
27.2
Translation
(A)
0.8
Closure
(%)
55.0
Bending Residues
( green )
  132 - 134
  173 - 174
  326 - 327
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download