Flavocytochrome C Fumarate Reductase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Flavocytochrome C Fumarate Reductase
  Conformer 1
(PDB)
1d4c (A)
  Conformer 2
(PDB)
1d4e (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 378 0.57   6 - 85   90 - 96   101 - 165   169 - 226   229 - 232   236 - 244   246 - 248   253 - 316   323 - 324   328 - 333   341 - 361   504 - 567
2 178 0.58   86 - 89   97 - 100   166 - 168   227 - 228   233 - 235   245 - 245   249 - 252   317 - 322   325 - 327   334 - 340   362 - 503

Sequence


           ___________________________________________________________________________________85__89_____96_100____________________ 
 1d4c(A) : APEVLADFHGEMGGCDSCHVSDKGGVTNDNLTHENGQCVSCHGDLKELAAAAPKDKVSPHKSHLIGEIACTSCHKGHEKSVAYCDACHSFGFDMPFGGKWERKFVPVDADKAAQDKAIAA 
         :                                                                                                                          
 1d4e(A) : ***VLADFHGEMGGCDSCHVSDKGGVTNDNLTHENGQCVSCHGDLKELAAAAP---vSPHKSHLIGEIACTSCHKGHEKSVAYCDACHSFGFDMPFGGKWERKFVPVDADKAAQDKAIAA 
           ___________________________________________________________________________________85__89_____96_100____________________ 

           __________________________________________165__________________________________________________________226___232________ 
 1d4c(A) : GVKETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASV 
         :                                                                                                                          
 1d4e(A) : GVKETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASV 
           __________________________________________165__________________________________________________________226___232________ 

           _244_248_252_____________________________________________________________316___322________333____340__________________36 
 1d4c(A) : NRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGFKATNHPGATGDGLDVALQAGAATRDLEY 
         :                                                                                                                          
 1d4e(A) : NRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILED--gKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGFKATNHPGATGDGLDVALQAGAATRDLQY 
           _244_248_252_____________________________________________________________316___322________333____340__________________36 

           1_______________________________________________________________________________________________________________________ 
 1d4c(A) : IQAHPTYSPAGGVMITEAVRGNGAIVVNREGNRFMNEITTRDKASAAILQQKGESAYLVFDDSIRKSLKAIEGYVHLNIVKEGKTIEELAKQIDVPAAELAKTVTAYNGFVKSGKDAQFE 
         :                                                                                                                          
 1d4e(A) : IQAHPTYSPAGGVMITEAVRGNGAIVVNREGNRFMNEITTRDKASAAILQQKGESAYLVFDDSIRKSLKAIEGYVHLNIVKEGKTIEELAKQIDVPAAELAKTVTAYNGFV-sGKDAQFE 
           1_______________________________________________________________________________________________________________________ 

           ____________________503___________________________________________________________________                               
 1d4c(A) : RPDLPRELVVAPFYALEIAPAVHHTMGGLVIDTKAEVKSEKTGKPITGLYAAGEVTGGVHGANRLGGNAISDIVTYGRIAGASAAKFAKD                               
         :                                                                                                                          
 1d4e(A) : RPDLPRELVVAPFYALEIAPAVHHTMGGLVIDTKAEVKSEKTAKPITGLYAAGEVTGGVHGANRLGGNAISDIVTYGRIAGASAAKFAK*                               
           ____________________503___________________________________________________________________                               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
4.5
Translation
(A)
0.0
Closure
(%)
97.8
Bending Residues
( green )
  85 - 86
  89 - 90
  96 - 97
  100 - 101
  165 - 166
  168 - 169
  226 - 229
  232 - 233
  235 - 236
  244 - 246
  248 - 249
  252 - 253
  316 - 317
  322 - 328
  333 - 334
  340 - 341
  361 - 362
  503 - 504
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download