Glutamate Racemase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Racemase
  Conformer 1
(PDB)
1b73 (A)
  Conformer 2
(PDB)
2ohg (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 204 3.03   5 - 138   166 - 174   184 - 244
2 36 3.9   139 - 165   175 - 183

Sequence


           ________________________________________________________________________________________________________________________ 
 1b73(A) : ***MKIGIFDSGVGGLTVLKAIRNRYRKVDIVYLGDTARVPYGIRSKDTIIRYSLECAGFLKDKGVDIIVVACNTASAYALERLKKEINVPVFGVIEPGVKEALKKSRNKKIGVIGTPAT 
         :                                                                                                                          
 2ohg(A) : MDTRPIGFLDSGVGGLTVVCELIRQLPHEKIVYIGDSARAPYGPRPKKQIKEYTWELVNFLLTQNVKMIVFACNTATAVAWEEVKAALDIPVLGVVLPGASAAIKSTTKGQVGVIGTPMT 
           ________________________________________________________________________________________________________________________ 

           ____________________138________________________165______174_____182_____________________________________________________ 
 1b73(A) : VKSGAYQRKLE--EGGADVFAKACPLFAPLAEEGLLEGEITRKVVEHYLKEFKGKIDTLILGCTHYPLLKKEIKKFLGDA-EVVDSSEA----LSLSLHNF-IKDDGSSSLEL-FFTDLS 
         :                                                                                                                          
 2ohg(A) : VASDIYRKKIQLLAPSIQVRSLACPKFVPIVESNEMCSSIAKKIVYDSLAPLVGKIDTLVLGCTHYPLLRPIIQNVMGPSVKLIDSGAECVRDISVLLNYFDINGNYHQaVEHRFFTTAN 
           ____________________143________________________170______179_____187_____________________________________________________ 

           ________________________                                                                                                 
 1b73(A) : PNLQFLIKLILGRDYPVKLAEGVF                                                                                                 
         :                                                                                                                          
 2ohg(A) : PEIFQEIASIWLKQKINVEHVTL*                                                                                                 
           ________________________                                                                                                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
31.9
Translation
(A)
-1.9
Closure
(%)
94.0
Bending Residues
( green )
  138 - 139
  165 - 166
  174 - 175
  182 - 186
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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