Glutamate Receptor, Ionotropic Kainate 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor, Ionotropic Kainate 2
  Conformer 1
(PDB)
4mh5 (A)
  Conformer 2
(PDB)
3u92 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 124 0.48   9 - 107   109 - 112   214 - 229   249 - 253
2 124 0.76   108 - 108   113 - 213   230 - 248   254 - 256

Sequence


           ______________________________________________________________________________________________________107__112__________ 
 4mh5(A) : GTNRSLIVTTLLEEPFVMFRKSDRTLYGNDRFEGYCIDLLKELAHILGFSYEIRLVEDGKYGAQDDKGQWNGMVKELIDHKADLAVAPLTITHVREKAIDFSKPFMTLGVSILYRKGTPI 
         :                                                                                                                          
 3u92(B) : **NRSLIVTTLLEEPFVMFRKSDRTLYGNDRFEGYCIDLLKELAHILGFSYEIRLVEDGKYGAQDDKGQWNGMVKELIDHKADLAVAPLTITHVREKAIDFSKPFMTLGVSILYRKGTPI 
           ______________________________________________________________________________________________________105__110__________ 

           ________________________________________________________________________________________213_____________229_____________ 
 4mh5(A) : DSADDLAKQTKIEYGAVKDGATMTFFKKSKISTFEKMWAFMSSKPSALVKNNEEGIQRTLTADYALLMESTTIEYITQRNCNLTQIGGLIDSKGYGIGTPMGSPYRDKITIAILQLQEED 
         :                                                                                                                          
 3u92(B) : DSADDLAKQTKIEYGAVKDGATMTFFKKSKISTFEKMWAFMSSKPSALVKNNEEGIQRTLTADYALLMESTTIEYITQRNCNLTQIGGLIDSKGYGIGTPMGSPYRDKITIAILQLQEED 
           ________________________________________________________________________________________211_____________227_____________ 

           ___248_252______                                                                                                         
 4mh5(A) : KLHIMKEKWWRGSGCP                                                                                                         
         :                                                                                                                          
 3u92(B) : KLHIMKEKWWRGSGCP                                                                                                         
           ___246_250______                                                                                                         

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.2
Translation
(A)
0.1
Closure
(%)
87.2
Bending Residues
( green )
  107 - 109
  112 - 113
  213 - 215
  229 - 230
  248 - 249
  252 - 256
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download