Glutamate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Dehydrogenase
  Conformer 1
(PDB)
1euz (E)
  Conformer 2
(PDB)
1euz (F)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 230 0.48   6 - 7   18 - 95   98 - 185   194 - 197   201 - 203   207 - 212   229 - 232   288 - 290   350 - 371   380 - 383   402 - 417
2 182 0.48   8 - 17   96 - 97   186 - 193   198 - 200   204 - 206   213 - 228   233 - 287   291 - 349   372 - 379   384 - 401

Sequence


           ____7________17____________________________________________________________________________95___________________________ 
 1euz(E) : *IDPFEMAVKQLERAAQYMDISEEALEWLKKPMRIVEVSVPIEMDDGSVKVFTGFRVQHNWARGPTKGGIRWHPAETLSTVKALATWMTWKVAVVDLPYGGGKGGIIVNPKELSEREQER 
         :                                                                                                                          
 1euz(F) : EIDPFEMAVKQLERAAQYMDISEEALEWLKKPMRIVEVSVPIEMDDGSVKVFTGFRVQHNWARGPTKGGIRWHPAETLSTVKALATWMTWKVAVVDLPYGGGKGGIIVNPKELSEREQER 
           ____7________17____________________________________________________________________________95___________________________ 

           ____________________________________________________________185_____193_197___203______________________228_232__________ 
 1euz(E) : LARAYIRAVYDVIGPWTDIPAPDVYTNPKIMGWMMDEYETIMRRKGPAFGVITGKPLSIGGSLGRGTATAQGAIFTIREAAKALGIDLKGKKIAVQGYGNAGYYTAKLAKEQLGMTVVAV 
         :                                                                                                                          
 1euz(F) : LARAYIRAVYDVIGPWTDIPAPDVYTNPKIMGWMMDEYETIMRRKGPAFGVITGKPLSIGGSLGRGTATAQGAIFTIREAAKALGIDLKGKKIAVQGYGNAGYYTAKLAKEQLGMTVVAV 
           ____________________________________________________________185_____193_197___203______________________228_232__________ 

           __________________________________________287___________________________________________________________349_____________ 
 1euz(E) : SDSRGGIYNPDGLDPDEVLKWKREHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITEKNADNIKAKIVAEVANGPVTPEADDILREKGILQIPDFLCNAGGVTVSYFEWVQNINGY 
         :                                                                                                                          
 1euz(F) : SDSRGGIYNPDGLDPDEVLKWKREHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITEKNADNIKAKIVAEVANGPVTPEADDILREKGILQIPDFLCNAGGVTVSYFEWVQNINGY 
           __________________________________________287___________________________________________________________349_____________ 

           ______371_____379_383_______________401__________________                                                                
 1euz(E) : YWTEEEVREKLDKKMTKAFWEVYNTHKDKNIHMRDAAYVVAVSRVYQAMKDRGWVKK                                                                
         :                                                                                                                          
 1euz(F) : YWTEEEVREKLDKKMTKAFWEVYNTHKDKNIHMRDAAYVVAVSRVYQAMKDRGWVKK                                                                
           ______371_____379_383_______________401__________________                                                                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
3.5
Translation
(A)
-0.1
Closure
(%)
90.5
Bending Residues
( green )
  7 - 8
  17 - 22
  95 - 98
  185 - 186
  193 - 194
  197 - 198
  200 - 201
  203 - 204
  206 - 213
  228 - 230
  232 - 233
  287 - 288
  290 - 291
  349 - 350
  371 - 372
  379 - 380
  383 - 384
  401 - 402
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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