Glutamate Receptor, Ionotropic Kainate 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor, Ionotropic Kainate 2
  Conformer 1
(PDB)
2xxr (A)
  Conformer 2
(PDB)
4h8i (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 155 0.38   434 - 538   735 - 747   761 - 797
2 89 0.36   539 - 734   748 - 760

Sequence


           __________________________________________________________________________________________________________538___________ 
 2xxr(A) : **SLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKGTPID 
         :                                                                                                                          
 4h8i(A) : NRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKGTPID 
           __________________________________________________________________________________________________________111___________ 

           ______________________________________________________________734_______744_____________760_____________________________ 
 2xxr(A) : SADDLAKQTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEG 
         :                                                                                                                          
 4h8i(A) : SADDLAKQTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEG 
           ______________________________________________________________187_______197_____________213_____________________________ 

           ________________                                                                                                         
 2xxr(A) : KLHMMKEKWW******                                                                                                         
         :                                                                                                                          
 4h8i(A) : KLHMMKEKWWRGNGCP                                                                                                         
           ________________                                                                                                         

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.3
Translation
(A)
0.5
Closure
(%)
72.7
Bending Residues
( green )
  538 - 539
  734 - 735
  744 - 749
  760 - 761
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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