Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB)
1iq5 (A)
  Conformer 2
(PDB)
1xa5 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 72 2.47   6 - 75   79 - 80
2 66 1.05   78 - 78   81 - 145

Sequence


           ___________________________________________________________________71___________________________________________________ 
 1iq5(A) : *LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD 
         :                                                                                                                          
 1xa5(A) : QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARk--DTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD 
           ___________________________________________________________________71___________________________________________________ 

           __________________________                                                                                               
 1iq5(A) : EMIREADIDGDGQVNYEEFVQMMTA*                                                                                               
         :                                                                                                                          
 1xa5(A) : EMIREADIDGDGQVNYEEFVQMMTAK                                                                                               
           __________________________                                                                                               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
40.2
Translation
(A)
-4.5
Closure
(%)
65.7
Bending Residues
( green )
  71 - 82
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download