3-Deoxy-Manno-Octulosonate Cytidylyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 3-Deoxy-Manno-Octulosonate Cytidylyltransferase
  Conformer 1
(PDB)
1vic (A)
  Conformer 2
(PDB)
1vh3 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 121 1.01   73 - 76   109 - 189   194 - 231
2 116 1.25   5 - 72   77 - 108   190 - 193   232 - 247

Sequence


           _____________________________________________________________________72_________________________________108_____________ 
 1vic(A) : SFTVIIPARFASSRLPGKPLADIKGKPMIQHVFEKALQSGASRVIIATDNENVADVAKSFGAEVCMTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNV 
         :                                                                                                                          
 1vh3(B) : SFTVIIPARFA--rLPGKPLADIKGKP-iQHVFEKALQSGASRVIIATDNENVADVAKSFGAEVC-tSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNV 
           _____________________________________________________________________72_________________________________108_____________ 

           _________________________________________________________________189_193___________________________________231__________ 
 1vic(A) : NMASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDTA 
         :                                                                                                                          
 1vh3(B) : N-aSLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQF-nLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDTA 
           _________________________________________________________________189_193___________________________________231__________ 

           _______________                                                                                                          
 1vic(A) : EDLEKVRAILAANGS                                                                                                          
         :                                                                                                                          
 1vh3(B) : EDLEKVRA*******                                                                                                          
           _______________                                                                                                          

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
16.3
Translation
(A)
-0.6
Closure
(%)
90.7
Bending Residues
( green )
  72 - 78
  108 - 109
  189 - 190
  193 - 194
  231 - 232
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download