D-Galactose-Binding Periplasmic Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name D-Galactose-Binding Periplasmic Protein
  Conformer 1
(PDB)
2fw0 (A)
  Conformer 2
(PDB)
2hph (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 153 0.48   111 - 255   296 - 303
2 147 0.46   4 - 110   256 - 295

Sequence


           __________________________________________________________________________________________________________109___________ 
 2fw0(A) : *DTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQG 
         :                                                                                                                          
 2hph(A) : ADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQG 
           __________________________________________________________________________________________________________109___________ 

           ________________________________________________________________________________________________________________________ 
 2fw0(A) : DLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPE 
         :                                                                                                                          
 2hph(A) : DLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPE 
           ________________________________________________________________________________________________________________________ 

           ___________254____________________________________293_____________                                                       
 2fw0(A) : ALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEF                                                       
         :                                                                                                                          
 2hph(A) : ALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAE*                                                       
           ___________254____________________________________293_____________                                                       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
35.4
Translation
(A)
2.0
Closure
(%)
99.3
Bending Residues
( green )
  109 - 113
  254 - 257
  293 - 297
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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