DNA Polymerase Eta

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name DNA Polymerase Eta
  Conformer 1
(PDB)
1jih (A)
  Conformer 2
(PDB)
1jih (B)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 375 1.07   4 - 93   102 - 121   127 - 391
2 128 0.7   94 - 101   122 - 126   392 - 506

Sequence


           ___________________________________________________________________________________________93_____101_________________12 
 1jih(A) : MSKFTWKELIQLGSPSKAYESSLACIAHIDMNAFFAQVEQMRCGLSKEDPVVCVQWNSIIAVSYAARKYGISRMDTIQEALKKCSNLIPIHTAVFKKGEDFWQYHDGCGSWVQDPAKQIS 
         :                                                                                                                          
 1jih(B) : MSKFTWKELIQLGSPSKAYESSLACIAHIDMNAFFAQVEQMRCGLSKEDPVVCVQWNSIIAVSYAARKYGISRMDTIQEALKKCSNLIPIHTAVFKKGEDFWQYHDGCGSWVQDPAKQIS 
           ___________________________________________________________________________________________93_____101_________________12 

           1__126__________________________________________________________________________________________________________________ 
 1jih(A) : VEDHKVSLEPYRRESRKALKIFKSACDLVERASIDEVFLDLGRICFNMLMFDNEYELTGDLKLKDALSNIREAFIGGNYDINSHLPLIPEKIKSLKFEGDVFNPEGRDLITDWDDVILAL 
         :                                                                                                                          
 1jih(B) : VEDHKVSLEPYRRESRKALKIFKSACDLVERASIDEVFLDLGRICFNMLMFDNEYELTGDLKLKDALSNIREAFIGGNYDINSHLPLIPEKIKSLKFEGDVFNPEGRDLITDWDDVILAL 
           1__126__________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1jih(A) : GSQVCKGIRDSIKDILGYTTSCGLSSTKNVCKLASNYKKPDAQTIVKNDCLLDFLDCGKFEITSFWTLGGVLGKELIDVLDLPHENSIKHIRETWPDNAGQLKEFLDAKVKQSDYDRSTS 
         :                                                                                                                          
 1jih(B) : GSQVCKGIRDSIKDILGYTTSCGLSSTKNVCKLASNYKKPDAQTIVKNDCLLDFLDCGKFEITSFWTLGGVLGKELIDVLDLPHENSIKHIRETWPDNAGQLKEFLDAKVKQSDYDRSTS 
           ________________________________________________________________________________________________________________________ 

           _________________________388____________________________________________________________________________________________ 
 1jih(A) : NIDPLKTADLAEKLFKLSRGRYGLPLSSRPVVKSMMSNKNLRGKSCNSIVDCISWLEVFCAELTSRIQDLEQEYNKIVIPRTVSISLKTKSYEVYRKSGPVAYKGINFQSHELLKVGIKF 
         :                                                                                                                          
 1jih(B) : NIDPLKTADLAEKLFKLSRGRYGLPLSSRPVVKSMMSNKNLRGKSCNSIVDCISWLEVFCAELTSRIQDLEQEYNKIVIPRTVSISLKTKSYEVYRKSGPVAYKGINFQSHELLKVGIKF 
           _________________________388____________________________________________________________________________________________ 

           _____________________________                                                                                            
 1jih(A) : VTDLDIKGKNKSYYPLTKLSMTITNFDII                                                                                            
         :                                                                                                                          
 1jih(B) : VTDLDIKGKNKSYYPLTKLSMTITNFDII                                                                                            
           _____________________________                                                                                            

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.9
Translation
(A)
0.5
Closure
(%)
17.0
Bending Residues
( green )
  93 - 94
  101 - 102
  121 - 122
  126 - 127
  388 - 395
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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