Guanylate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Guanylate Kinase
  Conformer 1
(PDB)
2f3t (C)
  Conformer 2
(PDB)
2f3t (F)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 141 0.44   4 - 34   91 - 204
2 56 0.2   35 - 90

Sequence


           _____________________________32____________________________________________________86___________________________________ 
 2f3t(C) : AQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSI 
         :                                                                                                                          
 2f3t(F) : AQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSI 
           _____________________________32____________________________________________________86___________________________________ 

           _____________________________________________________________________________________                                    
 2f3t(C) : FILPPSKIELDRRLR----dSEEVIAKRMAQAVAEMSHYAEYDYLIVNDDFDTALTDLKTIIRAERLRMSRQKQRHDALISKLLA                                    
         :                                                                                                                          
 2f3t(F) : FILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYAEYDYLIVNDDFDTALTDLKTIIRAERLRMSRQKQRHDALISKLLA                                    
           _____________________________________________________________________________________                                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
14.7
Translation
(A)
-0.3
Closure
(%)
27.7
Bending Residues
( green )
  32 - 37
  86 - 92
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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