H-2 Class I Histocompatibility Antigen, K-B Alpha Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name H-2 Class I Histocompatibility Antigen, K-B Alpha Chain
  Conformer 1
(PDB)
1zt7 (C)
  Conformer 2
(PDB)
1mwa (I)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 176 1.24   3 - 178
2 94 1.63   179 - 272

Sequence


           ________________________________________________________________________________________________________________________ 
 1zt7(C) : GPHSLRYFHTAVSRPGLGKPRFISVGYVDDTQFVRFDSDAENPRYEPRVRWMEQVEPEYWERNTQIAKGNEQIFRVNLRTALRYYNQSAGGSHTFQRMYGCEVGSDWRLLRGYEQYAYDG 
         :                                                                                                                          
 1mwa(I) : GPHSLRYFVTAVSRPGLGEPRYMEVGYVDDTEFVRFDSDAENPRYEPRARWMEQEGPEYWERETQKAKGNEQSFRVSLRTLLGYYNQSAGGSHTIQVISGCEVGSDGRLLRGYQQYAYDG 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________178______________________________________________________________ 
 1zt7(C) : CDYIALNEDLKTWTAADMAALITKHKWEQAGDAERDRAYLEGTCVEWLRRYLQLGNATLPRTDSPKAHVTRHSRPEDKVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGT 
         :                                                                                                                          
 1mwa(I) : CDYIALNEDLKTWTAADMAALITKHKWEQAGEAERLRAYLEGTCVEWLRRYLKNGNATLLRTDSPKAHVTHHSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGT 
           _______________________________________________________178______________________________________________________________ 

           ___________________________________                                                                                      
 1zt7(C) : FQKWASVVVPLGKEQYYTCHVYHQGLPEPLTLRWE                                                                                      
         :                                                                                                                          
 1mwa(I) : FQKWASVVVPLGKEQYYTCHVYHQGLPEPLTLRW*                                                                                      
           ___________________________________                                                                                      

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
16.5
Translation
(A)
0.1
Closure
(%)
0.4
Bending Residues
( green )
  178 - 182
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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