Hla Class I Histocompatibility Antigen

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hla Class I Histocompatibility Antigen
  Conformer 1
(PDB)
2bsv (D)
  Conformer 2
(PDB)
1lp9 (H)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 204 0.93   3 - 186   206 - 212   232 - 242   263 - 264
2 67 0.82   187 - 205   213 - 231   243 - 262   265 - 273

Sequence


           ________________________________________________________________________________________________________________________ 
 2bsv(D) : gSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDG 
         :                                                                                                                          
 1lp9(H) : GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDG 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________186________________205____212________________231________2 
 2bsv(D) : KDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGT 
         :                                                                                                                          
 1lp9(H) : KDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGT 
           _______________________________________________________________186________________205____212________________231________2 

           42_________________262_____________                                                                                      
 2bsv(D) : FQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWE                                                                                      
         :                                                                                                                          
 1lp9(H) : FQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWE                                                                                      
           42_________________262_____________                                                                                      

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.1
Translation
(A)
1.0
Closure
(%)
22.7
Bending Residues
( green )
  186 - 187
  205 - 206
  212 - 213
  231 - 232
  242 - 243
  262 - 265
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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