Maltose/maltodextrin Transport Atp-Binding Protein Malk

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Maltose/maltodextrin Transport Atp-Binding Protein Malk
  Conformer 1
(PDB)
1q12 (C)
  Conformer 2
(PDB)
2awn (B)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 90 0.57   11 - 81   200 - 218
2 65 0.75   89 - 153
3 46 0.57   154 - 199
4 145 0.97   219 - 363

Sequence


           ______________________________________________________________________________81________________________________________ 
 1q12(C) : **VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVL 
         :                                                                                                                          
 2awn(B) : ASVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVL 
           ______________________________________________________________________________81________________________________________ 

           _________________________149______________________________________________198_________________218_______________________ 
 1q12(C) : QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMNF 
         :                                                                                                                          
 2awn(B) : QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMNF 
           _________________________149______________________________________________198_________________218_______________________ 

           ________________________________________________________________________________________________________________________ 
 1q12(C) : LPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEHLLPSDIADVILEGEVQVVEQLGNETQIHIQIPSIRQNLVYRQNDVVLVEEGATFAIGLPPERCHLFREDGTA 
         :                                                                                                                          
 2awn(B) : LPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEHLLPSDIADVILEGEVQVVEQLGNETQIHIQIPSIRQNLVYRQNDVVLVEEGATFAIGLPPERCHLFREDGTA 
           ________________________________________________________________________________________________________________________ 

           ______________                                                                                                           
 1q12(C) : CRRLHKEPG*****                                                                                                           
         :                                                                                                                          
 2awn(B) : CRRLHKEPGVASAS                                                                                                           
           ______________                                                                                                           

Morph

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Domain Pairs

Fixed Domain Moving Domain Rotation Angle Translation   (A) Closure Bending Residues  
1 2 8.1 0.4 98.2   81 - 91 Bending Region Analysis
1 3 5.9 -0.2 91.6   198 - 201 Bending Region Analysis
1 4 8.0 -0.2 29.4   218 - 219 Bending Region Analysis
3 2 10.8 0.2 27.6   149 - 155 Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 4

Conformer 2 Contact:
Residue 4 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 3 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 3

Movement classification: Hinge

PyMOL Script

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