Abc Transporter Binding Protein Acbh

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Abc Transporter Binding Protein Acbh
  Conformer 1
(PDB)
3ooa (A)
  Conformer 2
(PDB)
3oo6 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 229 0.85   129 - 287   322 - 327   339 - 402
2 157 0.88   17 - 128   288 - 321   328 - 338

Sequence


           ____________________________________________________________________________________________________________________128_ 
 3ooa(A) : MSVSDGNGPITFGSNYSDEAPKAAFASLMQQATTSTTVPVTVNTTDHNTFQNNISNYLQGTPDSLATWFAGYRLQFFAAQGLLTPIDDVWDKIGGTFNDAAKSLSKGLDGHYYLVPLYNY 
         :                                                                                                                          
 3oo6(A) : *****GNGPITFGSNYSDEAPKAAFASLMQQATTSTTVPVTVNTTDHNTFQNNISNYLQGTPDSLATWFAGYRLQFFAAQGLLTPIDDVWDKIGGTFNDAAKSLSKGLDGHYYLVPLYNY 
           ____________________________________________________________________________________________________________________128_ 

           ________________________________________________________________________________________________________________________ 
 3ooa(A) : PWVVFYNKSVFQSKGYEVPASWEAFIALARKMQSDGLVPLAFADKDGWPALGTFDILNLRINGYDYHIKLMKHEVPWTDPGVTKVFDQWRELAAYQQKGANGRTWQDAAKALENKQAGMM 
         :                                                                                                                          
 3oo6(A) : PWVVFYNKSVFQSKGYEVPASWEAFIALARKMQSDGLVPLAFADKDGWPALGTFDILNLRINGYDYHIKLMKHEVPWTDPGVTKVFDQWRELAAYQQKGANGRTWQDAAKALENKQAGMM 
           ________________________________________________________________________________________________________________________ 

           ___________________________________287_____________________________319________________338_______________________________ 
 3ooa(A) : FQGSNQVAANYSAKNLPDLDFFVFPAINPQYGTDYMDAPTDGFILPKKGKNAAAAKKVLQYIGTAEAEAAFLKTDHWDVGLANGLIAPTYNDIQKKSVAEIGKCKSVSQFMDADTVPDMA 
         :                                                                                                                          
 3oo6(A) : FQGSNQVAANYSAKNLPDLDFFVFPAINPQYGTDYMDAPTDGFILPKKGKNAAAAKKVLQYIGTAEAEAAFLKTDHWDVGLANGLIAPTYNDIQKKSVAEIGKCKSVSQFMDRDTVPDMA 
           ___________________________________287_____________________________319________________338_______________________________ 

           ___________________________________                                                                                      
 3ooa(A) : NAMIKLIQQFIDQPTPETIATVQKSAEDQAKTIFR                                                                                      
         :                                                                                                                          
 3oo6(A) : NAMIKLIQQFIDQPTPETIATVQKSAEDQAKTIFR                                                                                      
           ___________________________________                                                                                      

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
37.9
Translation
(A)
0.3
Closure
(%)
95.1
Bending Residues
( green )
  128 - 130
  287 - 288
  319 - 328
  338 - 347
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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