Acetylglutamate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Acetylglutamate Kinase
  Conformer 1
(PDB)
1oha (A)
  Conformer 2
(PDB)
1gs5 (A)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 213 0.33   8 - 191   223 - 251
2 31 0.25   192 - 222

Sequence


           ________________________________________________________________________________________________________________________ 
 1oha(A) : MMNPLIIKLGGVLLDSEEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPVKKKNGLRVTPADQIDIITGALAGTANKTLLAWAKKHQIAAVGLFLGDGDSVKVTQLDEELG 
         :                                                                                                                          
 1gs5(A) : MMNPLIIKLGGVLLDSEEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPVKKKNGLRVTPADQIDIITGALAGTANKTLLAWAKKHQIAAVGLFLGDGDSVKVTQLDEELG 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________________191___________________________221___________________ 
 1oha(A) : HVGLAQPGSPKLINSLLENGYLPVVSSIGVTDEGQLMNVNADQAATALAATLGADLILLSDVSGILDGKGQRIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWRHA 
         :                                                                                                                          
 1gs5(A) : HVGLAQPGSPKLINSLLENGYLPVVSSIGVTDEGQLMNVNADQAATALAATLGADLILLSDVSGILDGKGQRIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWRHA 
           ____________________________________________________________________191___________________________221___________________ 

           __________________                                                                                                       
 1oha(A) : EQLPALFNGMPMGTRILA                                                                                                       
         :                                                                                                                          
 1gs5(A) : EQLPALFNGMPMGTRILA                                                                                                       
           __________________                                                                                                       

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
3.5
Translation
(A)
-0.2
Closure
(%)
80.1
Bending Residues
( green )
  191 - 192
  221 - 225
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download