Actin-Related Protein 3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Actin-Related Protein 3
  Conformer 1
(PDB)
1k8k (A)
  Conformer 2
(PDB)
1tyq (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 140 0.49   151 - 160   167 - 176   194 - 214   223 - 252   270 - 293   302 - 306   309 - 313   318 - 326   330 - 338   342 - 344   352 - 368   374 - 376
2 229 0.46   5 - 150   161 - 166   177 - 193   294 - 301   307 - 308   314 - 317   327 - 329   339 - 341   345 - 351   369 - 373   377 - 416
3 25 0.46   215 - 222   253 - 269

Sequence


           ________________________________________________________________________________________________________________________ 
 1k8k(A) : *GRLPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKEvMKGVDDLDFFIGDEAIEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFE 
         :                                                                                                                          
 1tyq(A) : AGRLPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKE-mKGVDDLDFFIGDEAIEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFE 
           ________________________________________________________________________________________________________________________ 

           _______________150__155________166_170____________________193__________________214_____222_________________________250__ 
 1k8k(A) : SFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGSKW 
         :                                                                                                                          
 1tyq(A) : SFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGSKW 
           _______________150__155________166_170____________________193__________________214_____222_________________________250__ 

           ______________269_____________________293_____301__306____313_317______326_________338___344____351__________368__373___ 
 1k8k(A) : IKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSkPKPIDVQVITHHMQRYA 
         :                                                                                                                          
 1tyq(A) : IKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEEL--pKPIDVQVITHHMQRYA 
           ______________269_____________________293_____301__306____313_317______326_________338___344____351__________368__373___ 

           __________________________________________                                                                               
 1k8k(A) : VWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPVFGVMS                                                                               
         :                                                                                                                          
 1tyq(A) : VWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPVFGVMS                                                                               
           __________________________________________                                                                               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
4.2
Translation
(A)
0.1
Closure
(%)
98.5
Bending Residues
( green )
  150 - 151
  155 - 162
  166 - 167
  170 - 177
  193 - 194
  293 - 294
  301 - 302
  306 - 309
  313 - 314
  317 - 318
  326 - 327
  329 - 330
  338 - 339
  341 - 342
  344 - 345
  351 - 352
  368 - 369
  373 - 374
  376 - 377
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
8.5
Translation
(A)
-0.1
Closure
(%)
96.8
Bending Residues
( green )
  214 - 215
  222 - 224
  250 - 253
  269 - 270
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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