Actin-Like Protein 3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Actin-Like Protein 3
  Conformer 1
(PDB)
2p9l (A)
  Conformer 2
(PDB)
2p9p (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 194 0.31   5 - 112   118 - 149   161 - 165   304 - 305   310 - 317   343 - 344   348 - 359   372 - 412
2 190 0.39   113 - 117   150 - 155   166 - 303   306 - 309   318 - 342   345 - 347   360 - 371

Sequence


           _________________________________________________________________________________________________112__117_______________ 
 2p9l(A) : AGRLPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKEvMKGVDDLDFFIGDEAIEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFE 
         :                                                                                                                          
 2p9p(A) : *GRLPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKE-mKGVDDLDFFIGDEAIEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFE 
           _________________________________________________________________________________________________112__117_______________ 

           ______________149___155______165________________________________________________________________________________________ 
 2p9l(A) : SFNVPGLYIAVQAVLALAASWTSqVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWI 
         :                                                                                                                          
 2p9p(A) : SFNVPGLYIAVQAVLALAASWTS----rTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDG-kWI 
           ______________149___155______165________________________________________________________________________________________ 

           _______________________________________________303___309_____317______________________342__347_________________371______ 
 2p9l(A) : KQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSkPKPIDVQVITHHMQRYAV 
         :                                                                                                                          
 2p9p(A) : KQYTGINA--kKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSkPKPIDVQVITHHMQRYAV 
           _______________________________________________303___309_____317______________________342__347_________________371______ 

           _______________________________________                                                                                  
 2p9l(A) : WFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPVFGV                                                                                  
         :                                                                                                                          
 2p9p(A) : WFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPVF**                                                                                  
           _______________________________________                                                                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
3.4
Translation
(A)
0.1
Closure
(%)
80.9
Bending Residues
( green )
  112 - 113
  117 - 118
  149 - 150
  155 - 161
  165 - 166
  303 - 306
  309 - 310
  317 - 318
  342 - 345
  347 - 360
  371 - 372
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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