Beta-Actin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Beta-Actin
  Conformer 1
(PDB) 		1nwk (A)
  Conformer 2
(PDB) 		1esv (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 211 0.71   11 - 12   129 - 132   146 - 348   354 - 354   356 - 356
2 138 0.73   8 - 10   13 - 128   133 - 145   349 - 353   355 - 355   357 - 369

Sequence


           ___10_______________________________________________________________________________________________________128_132_____ 
 1nwk(A) : TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPR-sYVGDEAQSKRGILTLKYPIEgIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQ 
         :                                                                                                                          
 1esv(A) : TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRdSYVGDEAQSKRGILTLKYPIEgIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQ 
           ___10_______________________________________________________________________________________________________128_132_____ 

           _____145________________________________________________________________________________________________________________ 
 1nwk(A) : AVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRC 
         :                                                                                                                          
 1esv(A) : AVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRC 
           _____145________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________348___________________________   
 1nwk(A) : PETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH****   
         :                                                                                                                          
 1esv(A) : PETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF   
           ________________________________________________________________________________________348___________________________   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		7.6
Translation
(A) 		0.1
Closure
(%) 		9.1
Bending Residues
( green ) 		  10 - 13
  128 - 129
  132 - 133
  145 - 146
  348 - 357
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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