Actin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Actin
  Conformer 1
(PDB)
2zwh (A)
  Conformer 2
(PDB)
1esv (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 194 1.63   13 - 15   140 - 330
2 158 1.49   9 - 12   16 - 139   331 - 372

Sequence


           __________12_15_________________________________________________________________________________________________________ 
 2zwh(A) : DEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEgIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 
         :                                                                                                                          
 1esv(A) : *****TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPR-----------dSYVGDEAQSKRGILTLKYPIEgIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 
           __________12_15_________________________________________________________________________________________________________ 

           _______________139______________________________________________________________________________________________________ 
 2zwh(A) : IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 
         :                                                                                                                          
 1esv(A) : IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 
           _______________139______________________________________________________________________________________________________ 

           ______________________________________________________________________________________330_______________________________ 
 2zwh(A) : LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQE 
         :                                                                                                                          
 1esv(A) : LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQE 
           ______________________________________________________________________________________330_______________________________ 

           ______________                                                                                                           
 2zwh(A) : YDEAGPSIVHRKCF                                                                                                           
         :                                                                                                                          
 1esv(A) : YDEAGPSIVHRKCF                                                                                                           
           ______________                                                                                                           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
11.5
Translation
(A)
0.1
Closure
(%)
30.2
Bending Residues
( green )
  12 - 13
  15 - 16
  139 - 140
  330 - 331
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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