Actin-5c

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Actin-5c
  Conformer 1
(PDB)
2hf4 (A)
  Conformer 2
(PDB)
2q36 (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 186 0.45   9 - 33   68 - 178   285 - 300   334 - 367
2 24 0.52   34 - 67
3 112 0.46   182 - 186   211 - 284   301 - 333
4 24 0.4   187 - 210

Sequence


           ______________________________33_______________________67_______________________________________________________________ 
 2hf4(A) : DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR-kDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP 
         :                                                                                                                          
 2q36(A) : **ETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHkDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVP 
           ______________________________33_______________________67_______________________________________________________________ 

           _____________________________________________178_____186_____________________210________________________________________ 
 2hf4(A) : AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTEEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELKDGQVITI 
         :                                                                                                                          
 2q36(A) : AMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITI 
           _____________________________________________178_____186_____________________210________________________________________ 

           _______________________________284_____________300______________________________333_____________________________________ 
 2hf4(A) : GNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 
         :                                                                                                                          
 2q36(A) : GNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIV 
           _______________________________284_____________300______________________________333_____________________________________ 

           _____                                                                                                                    
 2hf4(A) : HRKCF                                                                                                                    
         :                                                                                                                          
 2q36(A) : HR***                                                                                                                    
           _____                                                                                                                    

Morph

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Status: Initialising

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Domain Pairs

Fixed Domain Moving Domain Rotation Angle Translation   (A) Closure Bending Residues  
1 2 8.7 0.0 96.3   33 - 34   67 - 68 Bending Region Analysis
1 3 5.1 -0.1 89.0   178 - 182   284 - 285   300 - 301   333 - 334 Bending Region Analysis
4 3 9.8 -0.6 81.9   186 - 187   210 - 213 Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 4 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 4

Movement classification: Hinge

PyMOL Script

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