Aerolysin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Aerolysin
  Conformer 1
(PDB)
3c0m (A)
  Conformer 2
(PDB)
3c0m (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 311 0.92   84 - 201   223 - 274   292 - 293   299 - 422   444 - 458
2 80 0.46   4 - 83
3 48 0.58   202 - 222   280 - 291   294 - 298   442 - 443   459 - 466

Sequence


           ________________________________________________________________________________83______________________________________ 
 3c0m(A) : EPVYPDQLRLFSLGQGVCGDKYRPVNREEAQSVKSNIVGMMGQWQISGLANGWVIMGPGYNGEIKPGTASNTWCYPTNPVTGEIPTLSALDIPDGDEVDVQWRLVHDSANFIKPTSYLAH 
         :                                                                                                                          
 3c0m(B) : EPVYPDQLRLFSLGQGVCGDKYRPVNREEAQSVKSNIVGMMGQWQISGLANGWVIMGPGYNGEIKPGTASNTWCYPTNPVTGEIPTLSALDIPDGDEVDVQWRLVHDSANFIKPTSYLAH 
           ________________________________________________________________________________83______________________________________ 

           ___________________________________________________________________________199____________________222___________________ 
 3c0m(A) : YLGYAWVGGNHSQYVGEDMDVTRDGDGWVIRGNNDGGCDGYRCGDKTAIKVSNFAYNLDPDSFKHGDVTQSDRQLVKTVVGWAVNDSDTPQSGYDVTLRGDTATNWSKTNTYGLSEKVTT 
         :                                                                                                                          
 3c0m(B) : YLGYAWVGGNHSQYVGEDMDVTRDGDGWVIRGNNDGGCDGYRCGDKTAIKVSNFAYNLDPDSFKHGDVTQSDRQLVKTVVGWAVNDSDTPQSGYDVTLRGDTATNWSKTNTYGLSEKVTT 
           ___________________________________________________________________________199____________________222___________________ 

           ______________________________274______________291____298_______________________________________________________________ 
 3c0m(A) : KNKFKWPLVGETELSIEIAANQSWASQNGGSTTTSLSQSVRPTVPARSKIPVKIELYKADISYPYEFKADVSYDLTLSGFLRWGGNAWYTHPDNRPNWNHTFVIGPYKDKASSIRYQWDK 
         :                                                                                                                          
 3c0m(B) : KNKFKWPLVGETELSIEIAANQSWASQNGGSTTTSLSQSVRPTVPARSKIPVKIELYKADISYPYEFKADVSYDLTLSGFLRWGGNAWYTHPDNRPNWNHTFVIGPYKDKASSIRYQWDK 
           ______________________________274______________291____298_______________________________________________________________ 

           __________________________________________________________422________451_________________                                
 3c0m(A) : RYIPGEVKWWDWNWTIQQNGLSTMQNNLARVLRPVRAGITGDFSAESQFAGNIEIGAPVPLlRLEIPLDAQELSGLGFNNVSLSVTPAA                                
         :                                                                                                                          
 3c0m(B) : RYIPGEVKWWDWNWTIQQNGLSTMQNNLARVLRPVRAGITGDFSAESQFAGNIEIGAPVPLlRLEIPLDAQELSGLGFNNVSLSVTPAA                                
           __________________________________________________________422________451_________________                                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.2
Translation
(A)
0.7
Closure
(%)
37.9
Bending Residues
( green )
  83 - 84
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
7.9
Translation
(A)
0.0
Closure
(%)
0.0
Bending Residues
( green )
  199 - 202
  222 - 223
  274 - 282
  291 - 294
  298 - 299
  422 - 444
  451 - 459
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Shear

PyMOL Script

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