Alkyl Hydroperoxide Reductase Subunit F

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Alkyl Hydroperoxide Reductase Subunit F
  Conformer 1
(PDB)
1hyu (A)
  Conformer 2
(PDB)
4xvg (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 198 0.6   203 - 323   344 - 349   447 - 517
2 195 0.56   3 - 197
3 117 0.58   324 - 343   350 - 446

Sequence


           ________________________________________________________________________________________________________________________ 
 1hyu(A) : MLDTNMKTQLRAYLEKLTKPVELIATLDDSAKSAEIKELLAEIAELSDKVTFKEDNTLPVRKPSFLITNPGSQQGPRFAGSPLGHEFTSLVLALLWTGGHPSKEAQSLLEQIRDIDGDFE 
         :                                                                                                                          
 4xvg(A) : MLDTNMKTQLKAYLEKLTKPVELIATLDDSAKSAEIKELLAEIAELSDKVTFKEDNSLPVRKPSFLITNPGSNQGPRFAGSPLGHEFTSLVLALLWTGGHPSKEAQSLLEQIRHIDGDFE 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________193_______________________________________________ 
 1hyu(A) : FETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEITERNVMGVPAVFVNGKEFGQGRMTLTEIVAKVDTGAEKRAAEALNKRDAYDVLIVGSGPAGAAAAVYSARKGIRTGL 
         :                                                                                                                          
 4xvg(A) : FETYYSLSCHNCPDVVQALNLMSVLNPRIKHTAIDGGTFQNEITDRNVMGVPAVFVNGKEFGQGRMTLTEIVAKIDTGAEKRAAEELNKRDAYDVLIVGSGPAGAAAAIYSARKGIRTGL 
           ______________________________________________________________________193_______________________________________________ 

           ________________________________________________________________________________323_________________343_________________ 
 1hyu(A) : MGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAV 
         :                                                                                                                          
 4xvg(A) : MGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAV 
           ________________________________________________________________________________323_________________343_________________ 

           ___________________________________________________________________________________446__________________________________ 
 1hyu(A) : IGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALERNRMGEIIIDAKCETSV 
         :                                                                                                                          
 4xvg(A) : IGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGAVERNRMGEIIIDAKCETNV 
           ___________________________________________________________________________________446__________________________________ 

           _________________________________________                                                                                
 1hyu(A) : KGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYLIRTKIA                                                                                
         :                                                                                                                          
 4xvg(A) : KGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYLIRTK**                                                                                
           _________________________________________                                                                                

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
119.4
Translation
(A)
0.5
Closure
(%)
19.9
Bending Residues
( green )
  193 - 204
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
7.9
Translation
(A)
1.1
Closure
(%)
21.6
Bending Residues
( green )
  323 - 324
  343 - 350
  446 - 447
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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