Aspartate Aminotransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Aspartate Aminotransferase
  Conformer 1
(PDB)
1ahe (A)
  Conformer 2
(PDB)
9aat (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 294 1.19   35 - 35   40 - 332   354 - 360   387 - 387
2 88 1.08   17 - 34   36 - 39   333 - 353   361 - 386   388 - 407

Sequence


           ______________________________34________________________________________________________________________________________ 
 1ahe(A) : **MFENITAAPADPILGLADLFRADERPGKINLGIGLYYDETGKIPVLTSVKKAEQYLLENETTKLYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVAADFLAKNT 
         :                                                                                                                          
 9aat(A) : SSWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFF 
           ______________________________34________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1ahe(A) : SVKR-VWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHK 
         :                                                                                                                          
 9aat(A) : KFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGI 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________________332______________349________360________ 
 1ahe(A) : ELIVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSSPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKE 
         :                                                                                                                          
 9aat(A) : DVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPE 
           _________________________________________________________________________________332______________349________360________ 

           _______________386_______________________                                                                                
 1ahe(A) : QVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL*                                                                                
         :                                                                                                                          
 9aat(A) : QVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIHQVTK                                                                                
           _______________386_______________________                                                                                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
15.1
Translation
(A)
-0.4
Closure
(%)
99.0
Bending Residues
( green )
  34 - 40
  332 - 333
  349 - 354
  360 - 361
  386 - 388
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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