Atp Synthase Beta Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Atp Synthase Beta Chain
  Conformer 1
(PDB)
1e79 (E)
  Conformer 2
(PDB)
1e79 (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 279 1.57   11 - 131   172 - 330
2 182 1.0   132 - 171   331 - 472

Sequence


           ________________________________________________________________________________________________________________________ 
 1e79(E) : TTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSV 
         :                                                                                                                          
 1e79(D) : TTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSV 
           ________________________________________________________________________________________________________________________ 

           131_____________________________________171_____________________________________________________________________________ 
 1e79(E) : EQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEG 
         :                                                                                                                          
 1e79(D) : EQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYH-mIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEG 
           131_____________________________________171_____________________________________________________________________________ 

           _______________________________________________________________________________330______________________________________ 
 1e79(E) : QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHY 
         :                                                                                                                          
 1e79(D) : QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHY 
           _______________________________________________________________________________330______________________________________ 

           ___________________________________________________________________________________________________________              
 1e79(E) : DVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA*              
         :                                                                                                                          
 1e79(D) : DVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLAE              
           ___________________________________________________________________________________________________________              

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
27.5
Translation
(A)
1.2
Closure
(%)
65.1
Bending Residues
( green )
  131 - 132
  171 - 172
  330 - 331
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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