Binding Protein Component Of Abc Sugar Transporter

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Binding Protein Component Of Abc Sugar Transporter
  Conformer 1
(PDB)
5dvi (A)
  Conformer 2
(PDB)
5dvf (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 229 0.42   142 - 301   338 - 342   356 - 419
2 156 1.43   28 - 141   302 - 337   343 - 355

Sequence


           _________________________________________________________________________________________________________________141____ 
 5dvi(A) : NPGTVDVLHWWTSGGEAKAVETLKQQIQKDGFIWKDNAVAGGGGAAAMTVLKTRAISGNPPSAAQIKGPDIQEWGALGLLTELDDVAAANKWDDLLPRQVADIMKYDGHYVAVPVNIHRV 
         :                                                                                                                          
 5dvf(A) : NPGTVDVLHWWTSGGEAKAVETLKQQIQKDGFIWKDNA-------aAMTVLKTRAISGNPPSAAQIKGPDIQEWGALGLLTELDDVAAANKWDDLLPRQVADIMKYDGHYVAVPVNIHRV 
           _________________________________________________________________________________________________________________141____ 

           ________________________________________________________________________________________________________________________ 
 5dvi(A) : NWLWINPQVFDKAGAKVPTTLDELFAAADKLKAAGFIPLAHGGQPWQDSTVFEDLVLSILGPKGYHAAFVDLDEKTLTGPQMTEAFATLKRLGTYMDPNRAGRDWNIAAAEVINGKAGMQ 
         :                                                                                                                          
 5dvf(A) : NWLWINPQVFDKAGAKVPTTLDELFAAADKLKAAGFIPLAHGGQPWQDSTVFEDLVLSILGPKGYHAAFVDLDEKTLTGPQMTEAFATLKRLGTYMDPNRAGRDWNIAAAEVINGKAGMQ 
           ________________________________________________________________________________________________________________________ 

           _________________________________301_________________________________337_______________355______________________________ 
 5dvi(A) : IMGDWAKSEWSAAGKVAGKDYQCvAFPGTQGSFAYNIDSLAMFKLKDANDIKAQNDLAKVALEPEFQTVFNQNKGSLPVRQDMDMSKFDACTQKSAADFKEAAKGDGLQPSMAHNMATTL 
         :                                                                                                                          
 5dvf(A) : IMGDWAKSEWSAAGKVAGKDYQCVAFPGTQGSFAYNIDSLAMFKLKDANDIKAQNDLAKVALEPEFQTVFNQNKGSLPVRQDMDMSKFDACTQKSAADFKEAAKGDGLQPSMAHNMATTL 
           _________________________________301_________________________________337_______________355______________________________ 

           ____________________________________                                                                                     
 5dvi(A) : AVQGAIFDVVTNFLNDPQAEPATAVKQLNAAIKAAR                                                                                     
         :                                                                                                                          
 5dvf(A) : AVQGAIFDVVTNFLNDPQAEPATAVKQLNAAIKAAR                                                                                     
           ____________________________________                                                                                     

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
18.9
Translation
(A)
-0.2
Closure
(%)
99.7
Bending Residues
( green )
  141 - 143
  301 - 302
  337 - 343
  355 - 357
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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